Education
- Ph.D. in Computer Science, Delft University of Technology, 2011-2015. Thesis “Dissimilarity-Based Multiple Instance Learning”
- M.Sc. in Computer Science, Delft University of Technology, 2008-2010. Thesis “Random Subspace Method for One-Class Classifiers”
- B.Sc. in Computer Science, Delft University of Technology, 2004-2007
- International Baccalaureate, International School of The Hague, 1999-2004
Certifications
- Software Carpentry Instructor, 2020
- University Teaching Qualification, 2019
Experience
Associate professor, IT University of Copenhagen, 2021-current
- Part of DASYA group
Assistant professor, Eindhoven University of Technology, 2017-2020.
- Part of Medical Image Analysis group
- Research on learning with limited labeled data
- Received University Teaching Qualification (2019)
Postdoctoral researcher, Erasmus Medical Center, 2015-2016
- Part of Biomedical Imaging Group Rotterdam
- Project: Transfer learning in medical image analysis
Visiting researcher, MPI Intelligent Systems, Tübingen, Germany, 2013
- Visited Machine Learning and Computational Biology group (now at ETH Zurich)
- Advisor: Dr. Aasa Feragen
Ph.D. researcher, Delft University of Technology, The Netherlands, 2011-2015
- Part of Pattern Recognition Laboratory
- Project: Dissimilarity-Based Multiple Instance Learning
- Advisors: Prof. dr. Marco Loog and Dr. David M. J. Tax
M.Sc. intern Prime Vision, Delft, The Netherlands, 2010. Project on outlier detection.
Programmer (part-time), 2006-2010. Web development at Dreamsolution, software testing at Tjip, freelaance projects.
Grants and awards
Research funding
- Inge Lehmann grant 2021 (DKK 2.8M, ~EUR 380K) for project “Making Metadata Count” [News]
- Starting package Novo Nordisk 2021 (DKK 3.5M, ~EUR 470K) for project CATS: Choosing A Transfer Source for medical image classification
- NWO Lerarenbeurs (2019), ~ EUR 250K for a project on multi-task learning for explainable AI. Main applicant Ralf Raumanns
Other awarded grants
- Van Gogh grant (EUR 6K) for collaboration with University of Rouen, France (2020)
- Mozilla Open Science mini-grant (2019), USD 10K for organizing a workshop on open and inclusive academia
- TU Eindhoven Education Innovation funding (2018), EUR 120K internal funding for projects to improve medical image analysis courses (together with Dr. Mitko Veta and Dr. Joaquin Vanschoren).
- NVIDIA GPU Grant (2018), Titan XP GPU worth USD 1149.99
- Winner Lorentz-eScience competition 2017, EUR 15K for organizing a workshop “Crowdsourcing for medical image analysis”
- Winner Pallas Ludens Academic Challenge, 2016, EUR 5K for crowdsourcing project
- Travel scholarship Delft University of Technology, 2013, EUR 2.5K for visiting MPI Tuebingen for 3 months
- Travel scholarship ACM-W/Microsoft, 2013. EUR 1.2K for visiting Multiple Classifier Systems conference in Nanjing, China
Awards / honorable mentions
- Readers award at the first MELBA symposium for paper led by Ralf Raumanns
- Second place in Publons ECR Reviewer awards 2018
- Shortlisted for Techionista awards 2017
- Finalist STW Open Mind Award, 2015 for “Game for crowdsourcing medical image analysis”. Top 15 of 132 applicants
- Member of merit award, W.I.S.V. `Christiaan Huygens’, 2009. Recognized for my contribution to the society for mathematics and computer science students.
Teaching
ITU Copenhagen
- Data in the Wild (MSc), Fall 2021, 2022, 2023. Responsible instructor/ lecturer
- Seminar Data Science (MSc), Fall 2021, 2022, 2023. Lecturer
- First year project (BSc), Spring 2021, 2022, 2023. Responsible instructor / lecturer
- Research communication (PhD course), Autumn 2021. Guest lecturer
- Advanced Database Systems (MSc), Autumn 2021. Guest lecturer
TU Eindhoven
- 8DM20 Capita Selecta medical imaging, 2020. MSc course, lectures on semi-supervised and transfer learning
- 8QA01 image analysis project, 2017-2020. Responsible instructor / lecturer, 1st year BSc course.
- 8DC00 medical image analysis, 2017-2019. Instructor / lecturer, together with Dr. Mitko Veta, 3rd year BSc course.
Erasmus Medical Center
- Introduction to medical imaging, 2015-2016. MSc course for medical students, 1-2 lectures per year
TU Delft
- Advanced pattern recognition, 2014-2016. Lecturer/teaching assistant in intensive course for PhD students.
- Pattern recognition, 2011-2014. Lecturer (2 lectures) in BSc course for biomedical engineering students, teaching assistant in MSc course for computer science
- Algorithms and data structures, 2007. Teaching assistant in BSc course.
Advising
PhD researchers & postdocs
- Amelia Jiménez-Sánchez (2022 – current) – shortcuts in medical imaging
- Dovile Juodelyte (2022 – current) – choosing datasets for transfer learning
- Ralf Raumanns (2019 – current) – multi-task learning for explainable AI
- Ishaan Bhat (2019 – 2020) – learning from limited labeled data in liver MRI. Ishaan transferred to a different supervisor due to me leaving TU Eindhoven.
Supervision MSc students
- Stinna Ødgaard Winther (2023) – Public chest x-ray datasets
- Cathrine Damgaard, Trine Naja Eriksen (2023) – Hidden features in chest x-rays
- Théo Sourget (2023, visiting student) – Public datasets for medical image segmentation
- Ahmet Akkoc (2022) – Dataset use in medical image conferences
- Christine Kaarde Galsgaard (2022) – Values in MICCAI papers
- Nikolaj Kjøller Bjerregaard (2022) – Detecting furigana in Japanese media
- Irma van den Brandt (2020) – Transfer learning from (non)-medical datasets
- Britt Michels (2019-2020) – Evaluation of medical image segmentation
- Colin Nieuwlaat (2019-2020) – Transfer learning & dataset shift
- Rumjana Romanova (2019-2020) – Stability of deep multiple instance learning
- Tom van Sonsbeek (2018-2019) – Meta-learning for medical image segmentation
- Linde Hesse (2018-2019) – Lung nodule detection in spectral CT
Supervision BSc students
- Danielle Marie Dequin, Chrisanna Kate Cornish (2023) – Carbon footprint of Kaggle
- Jacob Andreas Sneding Rohde (2023) – Detecting fungus in construction images
- Kasper Thorhauge Grønbek, Andreas Skovdal (2022) – Hidden features in chest X-ray images
- Frederik Bechmann Faarup (2022) – Hidden features in mammography images
- Bas Mulders, Felix Schijve (2020) – Meta-features for (non)-medical datasets
- Thaomi Tran, Max Joosten (2020) – Multi-task learning with crowdsourced features
- Ivana Rovers, Francoise Brouckaert (2020) – Uncertainty in liver segmentation
- Marjolein Pijper (2019) – Semi-supervised learning for liver segmentation
- Audrey Pfeiffer, Sanne Mevissen, Emiel Roefs (2019) – Feature extraction for skin lesion images
- Elif Kübra Çontar (2018, visiting student) – Melanoma classification with crowdsourced labels
- Floris Fok (2018) – Transfer learning from non-medical images
- Merel Eussen (2018) – Crowdsourcing in chest CT images
- Marco van Tilburg, Timo van Limpt (2018) – Crowdsourcing for registration in chest CT
- Dylan Dophemont (2016) – A purposeful game for medical image annotation
PhD defense committee
- Richard Bortsov, Erasmus Medical Center, The Netherlands, 2022
- Jeppe Thagaard, Technical University of Denmark, Denmark, 2021
- Marco Domenico Cirillo, Linköping University, Sweden, 2021 (Opponent)
- Rosana El Jurdi, University of Rouen, France, 2021
- Annegreet van Opbroek, “Transfer learning for medical image segmentation”, Erasmus Medical Center, The Netherlands, 2018
- Jean-Paul Charbonnier, “Segmentation and quantification of airways and blood vessels in chest CT”, University of Nijmegen, The Netherlands, 2017
Professional service
Board or committees
- Co-founder of the Danish Reproducibility Network, 2023-
- Research Ethics Committee at IT University of Copenhagen, 2023-
- Social media chair MICCAI 2020 (largest medical imaging conference), 2019-2020
- Committee member Women in MICCAI, 2017-2018, committee to strengthen the representation of female scientists in medical imaging
- Board member NVPHBV (Dutch society of Pattern Recognition and Image Processing), 2014-current. Treasurer between 2014-2018.
- W.I.S.V. ‘Christiaan Huygens’, society for computer science and mathematics students. Full-time board member (2007-2008)
Workshop organization
- MICCAI FAIMI workshop 2023
- Avengers for Better Science, Leiden, The Netherlands, 2019
- Large-scale Annotation of Biomedical data and Expert Label Synthesis (MICCAI LABELS), Granada, Spain, 2018
- Crowdsourcing for Medical Image Analysis, Leiden, The Netherlands, 2018
- Large-scale Annotation of Biomedical data and Expert Label Synthesis (MICCAI LABELS), Quebec City, Canada, 2017
- Meetings of the Dutch Society of Pattern Recognition and Image Processing (NVPHBV), The Netherlands. 50-60 participants each
- Features and Structures (FEAST) workshop at International Conference on Machine Learning (ICML 2015), Lille, France. 170 registered participants.
- Features and Structures (FEAST) workshop at International Conference on Pattern Recognition (ICPR 2014), Stockholm, Sweden. 70 registered participants
Reviewing
- Area chair for MIDL 2023
- Associate editor Scientific Reports 2022
- Area chair for WiML workshop 2022
- Area chair for MIDL 2022
- Associate editor Pattern Recognition 2019-2020
- Area chair for MICCAI 2019
- I have reviewed over 130 articles for international journals and conferences, such as Nature Communications, IEEE TPAMI, IEEE TMI, IEEE TNNLS, Pattern Recognition, MICCAI, ISBI, NeurIPS and others.
A verified record of my reviews can be found on my Publons page.
Grant reviewing
- Israel Ministry of Science and Technology – 2022
- Hartstichting (Dutch Heart Foundation) – 2021
- ANR (French National Research Agency) – 2021
- FWO (Belgian Research Foundation) / Astra Zeneca – 2020
- ETH postdoc fellowship – 2018
- NSERC (National Sciences and Research Council of Canada) – 2017
Publications
Please see this page or my Google Scholar page for an up-to-date list of publications.
Talks
I have given several invited and contributed talks at international and national conferences. I have also given several talks focusing on outreach and career development. For a full list please see this page.
Outreach
I use this website (http://www.veronikach.com) and social media to communicate about my research and about academic life. My work has been featured in various articles, podcasts etc:
- PhDTalk podcast
- Interview with Eindhovens Dagblad (in Dutch)
- How I Fail series on the NaturalScience.Careers podcast
- De Ingenieur interviewed me about failure for their March 2020 issue (in Dutch)
- I wrote about failure in academia for The Times Higher Education
- ProfHacker blog featured my “How I Fail” series
- Personal Finance for PhDs podcast
- WithAScienceDegree interview series
- WeTalkScience blog post series
- Software Engineering Radio podcast
- Chemical & Engineering news
- MeetTheScholar interview series
- How I Work interview series